recipy.PatchScientific module

class recipy.PatchScientific.PatchGDAL

Bases: recipy.PatchSimple.PatchSimple

input_functions = ['Open']

input_wrapper(wrapped, instance, args, kwargs)

modulename = 'gdal'

output_functions = ['Driver.Create', 'Driver.CreateCopy']

output_wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchImageio

Bases: recipy.PatchSimple.PatchSimple

input_functions = ['core.functions.get_reader', 'core.functions.read']

input_wrapper(wrapped, instance, args, kwargs)

modulename = 'imageio'

output_functions = ['core.functions.get_writer']

output_wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchIris

Bases: recipy.PatchSimple.PatchSimple

input_functions = ['iris.load', 'iris.load_cube', 'iris.load_cubes', 'iris.load_raw']

input_wrapper(wrapped, instance, args, kwargs)

modulename = 'iris'

output_functions = ['iris.save']

output_wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchNIBabel

Bases: recipy.PatchSimple.PatchSimple

image_name = 'spm2analyze.Spm2AnalyzeImage'

images = ['nifti1.Nifti1Image', 'nifti2.Nifti2Image', 'freesurfer.mghformat.MGHImage', 'spm99analyze.Spm99AnalyzeImage', 'minc1.Minc1Image', 'minc2.Minc2Image', 'analyze.AnalyzeImage', 'parrec.PARRECImage', 'spm2analyze.Spm2AnalyzeImage']

input_functions = ['nifti1.Nifti1Image.from_filename', 'nifti2.Nifti2Image.from_filename', 'freesurfer.mghformat.MGHImage.from_filename', 'spm99analyze.Spm99AnalyzeImage.from_filename', 'minc1.Minc1Image.from_filename', 'minc2.Minc2Image.from_filename', 'analyze.AnalyzeImage.from_filename', 'parrec.PARRECImage.from_filename', 'spm2analyze.Spm2AnalyzeImage.from_filename']

input_wrapper(wrapped, instance, args, kwargs)

modulename = 'nibabel'

output_functions = ['nifti1.Nifti1Image.to_filename', 'nifti2.Nifti2Image.to_filename', 'freesurfer.mghformat.MGHImage.to_filename', 'spm99analyze.Spm99AnalyzeImage.to_filename', 'minc1.Minc1Image.to_filename', 'minc2.Minc2Image.to_filename', 'analyze.AnalyzeImage.to_filename', 'parrec.PARRECImage.to_filename', 'spm2analyze.Spm2AnalyzeImage.to_filename']

output_wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchNetCDF4

Bases: recipy.PatchFileOpenLike.PatchFileOpenLike

functions = ['Dataset']

modulename = 'netCDF4'

wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchSKLearn

Bases: recipy.PatchSimple.PatchSimple

input_functions = ['datasets.load_svmlight_file']

input_wrapper(wrapped, instance, args, kwargs)

modulename = 'sklearn'

output_functions = ['datasets.dump_svmlight_file']

output_wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchTifffile

Bases: recipy.PatchSimple.PatchSimple

input_functions = ['imread']

input_wrapper(wrapped, instance, args, kwargs)

modulename = 'tifffile'

output_functions = ['imsave']

output_wrapper(wrapped, instance, args, kwargs)

class recipy.PatchScientific.PatchXarray

Bases: recipy.PatchMultipleWrappers.PatchMultipleWrappers

input_functions = ['open_dataset', 'open_mfdataset', 'open_rasterio', 'open_dataarray']

modulename = 'xarray'

output_functions = ['Dataset.to_netcdf', 'DataArray.to_netcdf']

wrappers = <recipy.PatchMultipleWrappers.WrapperList object>